- Basic information
- CohesinDB ID: CDBP00411819
- Locus: chr21-5060127-5062343
-
Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE143937, ENCSR230ZWH, GSE67783, GSE72082, GSE86191, GSE98367, GSE25021, ENCSR879KXD, GSE206145-NatGen2015, ENCSR153HNT, GSE68388, ENCSR703TNG, GSE131606, GSE108869, GSE94872, ENCSR000ECS, GSE115602
-
Cell type: MCF-7, Macrophage, Fibroblast, HCT-116, HUVEC, HeLa-S3, K-562, Liver, HSPC, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops