- Basic information
- CohesinDB ID: CDBP00411821
- Locus: chr21-5063465-5066236
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Data sourse: GSE206145-GSE177045, GSE103477, GSE111537, GSE131606, GSE165895, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE67783, GSE86191, GSE206145-NatGen2015, GSE120943, GSE98367, ENCSR879KXD, GSE206145, GSE62063, ENCSR000BMY, GSE55407, GSE38395, ENCSR153HNT, GSE50893, GSE126755
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Cell type: GM2610, OCI-AML-3, B-cell, GM2630, Fibroblast, GM12890, hLCL, GM2255, K-562, HFFc6, DKO, SNYDER, Monocytes, GM12878, GM2588, GM19239, THP-1, Macrophage, Ramos, MCF-7, HCT-116, GM19238, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.733
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: REST, ERG, MYC
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops