- Basic information
- CohesinDB ID: CDBP00411822
- Locus: chr21-5066578-5070034
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Data sourse: GSE67783, GSE86191, GSE98367, GSE116868, ENCSR000BLY, ENCSR879KXD, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE68388, GSE83726, GSE111537, GSE131606, GSE126755, ENCSR000ECS, GSE165895
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Cell type: RPE, Macrophage, Fibroblast, HCT-116, RH4, MB157, OCI-AML-3, HeLa-S3, SK-N-SH, K-562, Neutrophil, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops