- Basic information
- CohesinDB ID: CDBP00411829
- Locus: chr21-5089819-5091826
-
Data sourse: ENCSR167MTG, ENCSR000EEG, ENCSR338DUC, ENCSR230ZWH, ENCSR000BKV, GSE67783, GSE72082, GSE86191, GSE98367, GSE25021, GSE111913, GSE38411, ENCSR000BLS, GSE206145, GSE206145-NatGen2015, GSE120943, ENCSR153HNT, GSE68388, GSE131606, ENCSR917QNE
-
Cell type: RPE, Macrophage, Fibroblast, HCT-116, Monocytes, Hep-G2, RT-112, K-562, BCBL-1, Liver, HSPC, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: SA1,Rad21,SA2,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops