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Basic information

CohesinDB ID: CDBP00411830

Locus: chr21-5094267-5099867

Data sourse: ENCSR230ZWH, GSE67783, GSE86191, GSE98367, GSE116868, GSE111913, GSE206145, GSE206145-NatGen2015, GSE120943, ENCSR153HNT, GSE68388, GSE131606, GSE94872

Cell type: RPE, Macrophage, Fibroblast, HCT-116, Monocytes, MB157, HUVEC, RT-112, K-562, Liver, HSPC, HuCC-T1, DKO

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 5% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.856

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 62% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: IKZF1, MAF1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00411830