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Basic information

CohesinDB ID: CDBP00411831

Locus: chr21-5100601-5108814

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, GSE116868, ENCSR000BLY, GSE105028, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, GSE115602, ENCSR917QNE, ENCSR000BTU, GSE165895, ENCSR000DZP, ENCSR000EAC, GSE67783, ENCSR000BKV, GSE86191, GSE93080, GSE101921, GSE206145-NatGen2015, GSE120943, ENCSR703TNG, GSE94872, GSE98367, GSE206145, GSE62063, ENCSR000BMY, ENCSR000BTQ, GSE38395, GSE131956, GSE111913, GSE155324, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE50893, GSE126755, ENCSR000ECS, GSE131577

Cell type: MDM, RH4, GM10847, GM2610, GM19240, OCI-AML-3, HSPC, Liver, HuCC-T1, B-cell, H9-hESC, GM2630, RPE, Fibroblast, Ishikawa, GM12890, HeLa-S3, hLCL, GM2255, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, RT-112, GM19193, GM19099, Macrophage, MCF-7, GM12892, Ramos, HCT-116, HL-60, HUVEC, HCAEC, GM19238, Neutrophil, GM18951

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 23% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.444

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 62% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, SKI, POU2F2, BCL6, POU5F1, EBF1, RUNX1T1, GTF2B, CDK9, ERG, YY1, RELA, MYC, RUNX3, BATF, GABPA, TAL1, ETV6, MED1, NR3C1, ZEB1, ELF1, MYB, LMO2, JUN, TCF12, BCL11A, SPI1, NR4A1, TAF1, IRF4, FLI1, BRD4, JUND, TCF3

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00411831