- Basic information
- CohesinDB ID: CDBP00411832
- Locus: chr21-5110876-5111483
-
Data sourse: GSE206145-GSE177045, GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, GSE120943, ENCSR153HNT
-
Cell type: MCF-7, RPE, Fibroblast, HCT-116, Monocytes, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ESR1
- Target gene symbol (double-evidenced CRMs): GATD3B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000280071,
- Related loop:
chr21:5100000-5125000~~chr21:43800000-43825000,
chr21:5100000-5125000~~chr21:44125000-44150000,
chr21:5100000-5125000~~chr21:44150000-44175000,
chr21:5100000-5125000~~chr21:44250000-44275000,
chr21:5100000-5125000~~chr21:44275000-44300000,
chr21:5100000-5125000~~chr21:44300000-44325000,
chr21:5100000-5125000~~chr21:44325000-44350000,
chr21:5100000-5125000~~chr21:44425000-44450000,
chr21:5100000-5125000~~chr21:44450000-44475000,
chr21:5100000-5125000~~chr21:44475000-44500000,
chr21:5100000-5125000~~chr21:44750000-44775000,
chr21:5100000-5125000~~chr21:44775000-44800000,
chr21:5100000-5125000~~chr21:44925000-44950000,
chr21:5100000-5125000~~chr21:45100000-45125000,