- Basic information
- CohesinDB ID: CDBP00411844
- Locus: chr21-5144780-5145873
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): FP565260.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000275464,
- Related loop:
chr21:5125000-5150000~~chr21:43300000-43325000,
chr21:5125000-5150000~~chr21:43800000-43825000,
chr21:5125000-5150000~~chr21:43825000-43850000,
chr21:5125000-5150000~~chr21:44025000-44050000,
chr21:5125000-5150000~~chr21:44050000-44075000,
chr21:5125000-5150000~~chr21:44075000-44100000,
chr21:5150000-5175000~~chr21:44000000-44025000,
chr21:5150000-5175000~~chr21:44075000-44100000,
chr21:5150000-5175000~~chr21:44100000-44125000,