- Basic information
- CohesinDB ID: CDBP00411846
- Locus: chr21-5153420-5155308
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Data sourse: GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BSB, GSE126634, GSE116868, ENCSR404BPV, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR917QNE, ENCSR000EFJ, GSE165895, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE101921, GSE206145-NatGen2015, ENCSR198ZYJ, GSE130135, GSE116344, ENCSR338DUC, ENCSR879KXD, GSE206145, GSE62063, GSE38395, ENCSR853VWZ, GSE129526, GSE111913, GSE155324, ENCSR153HNT, GSE68388, GSE83726, GSE50893, GSE126755, ENCSR000ECS, GSE38411
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Cell type: RH4, GM10847, GM2610, OCI-AML-3, HSPC, Liver, HuCC-T1, RPE, Fibroblast, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18951, SNYDER, MB157, Lymphoblast, GM12878, GM12891, GM2588, GM19239, RT-112, GM19193, GM19099, Ramos, MCF-7, GM12892, HCT-116, HEK293T, Hep-G2, Neurons-H1, A-549, HCAEC, GM19238, Neutrophil, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 17% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.544
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, E2F6, ELF1, FLI1, HIF1A, E2F1, TCF12, SPI1, ERG
- Target gene symbol (double-evidenced CRMs): FP565260.6,FP565260.1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000275464,
ENSG00000280433,
- Related loop:
chr21:5125000-5150000~~chr21:43300000-43325000,
chr21:5125000-5150000~~chr21:43800000-43825000,
chr21:5125000-5150000~~chr21:43825000-43850000,
chr21:5125000-5150000~~chr21:44025000-44050000,
chr21:5125000-5150000~~chr21:44050000-44075000,
chr21:5125000-5150000~~chr21:44075000-44100000,
chr21:5150000-5175000~~chr21:44000000-44025000,
chr21:5150000-5175000~~chr21:44075000-44100000,
chr21:5150000-5175000~~chr21:44100000-44125000,