Deatailed information for cohesin site CDBP00411860
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00411860
- Locus: chr21-5241842-5242143
- Data sourse: GSE126755, GSE120943, GSE98367
- Cell type: Neutrophil, Monocytes, Macrophage
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,SMC1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False
- Compartment: 62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop: chr21:5225000-5250000~~chr21:10000000-10025000, chr21:5225000-5250000~~chr21:10100000-10125000, chr21:5225000-5250000~~chr21:10125000-10150000, chr21:5225000-5250000~~chr21:10325000-10350000, chr21:5225000-5250000~~chr21:10350000-10375000, chr21:5225000-5250000~~chr21:10375000-10400000, chr21:5225000-5250000~~chr21:10400000-10425000, chr21:5225000-5250000~~chr21:10425000-10450000, chr21:5225000-5250000~~chr21:10450000-10475000, chr21:5225000-5250000~~chr21:10525000-10550000, chr21:5225000-5250000~~chr21:10550000-10575000, chr21:5225000-5250000~~chr21:10575000-10600000, chr21:5225000-5250000~~chr21:10600000-10625000, chr21:5225000-5250000~~chr21:10625000-10650000, chr21:5225000-5250000~~chr21:10750000-10775000, chr21:5225000-5250000~~chr21:10775000-10800000, chr21:5225000-5250000~~chr21:10800000-10825000, chr21:5225000-5250000~~chr21:12975000-13000000, chr21:5225000-5250000~~chr21:13250000-13275000, chr21:5225000-5250000~~chr21:13800000-13825000, chr21:5225000-5250000~~chr21:5350000-5375000, chr21:5225000-5250000~~chr21:7200000-7225000, chr21:5225000-5250000~~chr21:7225000-7250000, chr21:5225000-5250000~~chr21:7250000-7275000, chr21:5225000-5250000~~chr21:7925000-7950000, chr21:5225000-5250000~~chr21:7950000-7975000, chr21:5225000-5250000~~chr21:8525000-8550000, chr21:5225000-5250000~~chr21:8750000-8775000, chr21:5225000-5250000~~chr21:8775000-8800000, chr21:5225000-5250000~~chr21:9000000-9025000, chr21:5225000-5250000~~chr21:9550000-9575000, chr21:5225000-5250000~~chr21:9575000-9600000, chr21:5225000-5250000~~chr21:9600000-9625000, chr21:5225000-5250000~~chr21:9650000-9675000, chr21:5225000-5250000~~chr21:9725000-9750000, chr21:5225000-5250000~~chr21:9750000-9775000, chr21:5225000-5250000~~chr21:9775000-9800000, chr21:5225000-5250000~~chr21:9825000-9850000, chr21:5225000-5250000~~chr21:9850000-9875000, chr21:5225000-5250000~~chr21:9875000-9900000, chr21:5225000-5250000~~chr21:9925000-9950000, chr21:5225000-5250000~~chr21:9950000-9975000, chr21:5225000-5250000~~chr21:9975000-10000000,
Tools:
- Assay
