- Basic information
- CohesinDB ID: CDBP00411861
- Locus: chr21-5242569-5246033
-
Data sourse: GSE143937, GSE67783, ENCSR000BKV, GSE98367, GSE25021, ENCSR879KXD, GSE62063, ENCSR153HNT, GSE83726, GSE116344, GSE145327, GSE126755, GSE73207
-
Cell type: MCF-7, RH4, TF-1, CNCC-WT33iPSC, K-562, Neutrophil, HSPC, Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RBFOX2, CTCF, RAD21, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:5225000-5250000~~chr21:10000000-10025000,
chr21:5225000-5250000~~chr21:10100000-10125000,
chr21:5225000-5250000~~chr21:10125000-10150000,
chr21:5225000-5250000~~chr21:10325000-10350000,
chr21:5225000-5250000~~chr21:10350000-10375000,
chr21:5225000-5250000~~chr21:10375000-10400000,
chr21:5225000-5250000~~chr21:10400000-10425000,
chr21:5225000-5250000~~chr21:10425000-10450000,
chr21:5225000-5250000~~chr21:10450000-10475000,
chr21:5225000-5250000~~chr21:10525000-10550000,
chr21:5225000-5250000~~chr21:10550000-10575000,
chr21:5225000-5250000~~chr21:10575000-10600000,
chr21:5225000-5250000~~chr21:10600000-10625000,
chr21:5225000-5250000~~chr21:10625000-10650000,
chr21:5225000-5250000~~chr21:10750000-10775000,
chr21:5225000-5250000~~chr21:10775000-10800000,
chr21:5225000-5250000~~chr21:10800000-10825000,
chr21:5225000-5250000~~chr21:12975000-13000000,
chr21:5225000-5250000~~chr21:13250000-13275000,
chr21:5225000-5250000~~chr21:13800000-13825000,
chr21:5225000-5250000~~chr21:5350000-5375000,
chr21:5225000-5250000~~chr21:7200000-7225000,
chr21:5225000-5250000~~chr21:7225000-7250000,
chr21:5225000-5250000~~chr21:7250000-7275000,
chr21:5225000-5250000~~chr21:7925000-7950000,
chr21:5225000-5250000~~chr21:7950000-7975000,
chr21:5225000-5250000~~chr21:8525000-8550000,
chr21:5225000-5250000~~chr21:8750000-8775000,
chr21:5225000-5250000~~chr21:8775000-8800000,
chr21:5225000-5250000~~chr21:9000000-9025000,
chr21:5225000-5250000~~chr21:9550000-9575000,
chr21:5225000-5250000~~chr21:9575000-9600000,
chr21:5225000-5250000~~chr21:9600000-9625000,
chr21:5225000-5250000~~chr21:9650000-9675000,
chr21:5225000-5250000~~chr21:9725000-9750000,
chr21:5225000-5250000~~chr21:9750000-9775000,
chr21:5225000-5250000~~chr21:9775000-9800000,
chr21:5225000-5250000~~chr21:9825000-9850000,
chr21:5225000-5250000~~chr21:9850000-9875000,
chr21:5225000-5250000~~chr21:9875000-9900000,
chr21:5225000-5250000~~chr21:9925000-9950000,
chr21:5225000-5250000~~chr21:9950000-9975000,
chr21:5225000-5250000~~chr21:9975000-10000000,
chr21:5250000-5275000~~chr21:10100000-10125000,
chr21:5250000-5275000~~chr21:10325000-10350000,
chr21:5250000-5275000~~chr21:10400000-10425000,
chr21:5250000-5275000~~chr21:9750000-9775000,