- Basic information
- CohesinDB ID: CDBP00411873
- Locus: chr21-5348908-5349493
-
Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:5225000-5250000~~chr21:5350000-5375000,
chr21:5325000-5350000~~chr21:7250000-7275000,
chr21:5350000-5375000~~chr21:10325000-10350000,
chr21:5350000-5375000~~chr21:10450000-10475000,
chr21:5350000-5375000~~chr21:10625000-10650000,
chr21:5350000-5375000~~chr21:10750000-10775000,
chr21:5350000-5375000~~chr21:10775000-10800000,
chr21:5350000-5375000~~chr21:10800000-10825000,
chr21:5350000-5375000~~chr21:7275000-7300000,
chr21:5350000-5375000~~chr21:7950000-7975000,
chr21:5350000-5375000~~chr21:9775000-9800000,