- Basic information
- CohesinDB ID: CDBP00411963
- Locus: chr21-6024819-6028713
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR000BLY, GSE105028, GSE131606, GSE25021, GSE165895, ENCSR000EFJ, GSE115602, ENCSR917QNE, GSE67783, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, ENCSR703TNG, GSE116344, GSE98367, ENCSR000BLS, GSE206145, GSE85526, ENCSR000BTQ, ENCSR167MTG, GSE111913, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS
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Cell type: RH4, GM2610, Liver, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, HEKn, GM12890, HeLa-S3, IMR-90, HFFc6, DKO, H1-hESC, GM2588, SK-N-SH, RT-112, Macrophage, MCF-7, Hela-Kyoto, HCT-116, Hep-G2, GM19238, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 13% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.722
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops