- Basic information
- CohesinDB ID: CDBP00411976
- Locus: chr21-6058805-6061719
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Data sourse: ENCSR230ZWH, GSE72082, ENCSR501LQA, GSE116868, ENCSR760NPX, ENCSR150EFU, GSE131606, ENCSR330ELC, GSE108869, GSE25021, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, GSE67783, GSE86191, GSE138405, GSE76893, GSE101921, ENCSR806UKK, ShirahigeLab-NatGen2015, GSE138105, ENCSR199XBQ, ENCSR703TNG, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR193NSH, ENCSR768DOX, ENCSR000BLS, ShirahigeLab, GSE85526, ENCSR981FDC, ENCSR247LSH, ENCSR807WAC, ENCSR620NWG, ENCSR748MVX, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR000HPG, ENCSR676MJK, GSE111913, ENCSR335RKQ, ENCSR054FKH, ENCSR537EFT, ENCSR000EDE, GSE68388, GSE126990, ENCSR000ECS
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Cell type: SLK, Liver, HuCC-T1, RPE, Fibroblast, HEKn, HeLa-S3, IMR-90, DKO, MB157, RT-112, MCF-7, Hela-Kyoto, HCT-116, Hep-G2, A-549, HUVEC, HCAEC, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 25% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops