- Basic information
- CohesinDB ID: CDBP00411989
- Locus: chr21-6099964-6100695
-
Data sourse: GSE67783, ShirahigeLab, ShirahigeLab-NatGen2015, GSE83726, GSE116344
-
Cell type: RPE, Fibroblast, RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:6075000-6100000~~chr21:43175000-43200000,
chr21:6075000-6100000~~chr21:43300000-43325000,
chr21:6075000-6100000~~chr21:43450000-43475000,
chr21:6075000-6100000~~chr21:43600000-43625000,
chr21:6075000-6100000~~chr21:43625000-43650000,
chr21:6100000-6125000~~chr21:43175000-43200000,
chr21:6100000-6125000~~chr21:43200000-43225000,
chr21:6100000-6125000~~chr21:43300000-43325000,
chr21:6100000-6125000~~chr21:43325000-43350000,
chr21:6100000-6125000~~chr21:43350000-43375000,
chr21:6100000-6125000~~chr21:43600000-43625000,
chr21:6100000-6125000~~chr21:43625000-43650000,
chr21:6100000-6125000~~chr21:43650000-43675000,