- Basic information
- CohesinDB ID: CDBP00412004
- Locus: chr21-6154012-6156147
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Data sourse: ENCSR167MTG, GSE67783, GSE72082, GSE86191, GSE98367, GSE105028, ShirahigeLab-NatGen2015, ENCSR054FKH, ShirahigeLab, ENCSR198ZYJ, ENCSR917QNE
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Cell type: RPE, Fibroblast, HCT-116, Hep-G2, Neurons-H1, Liver, HSPC, Macrophage, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:6125000-6150000~~chr21:43175000-43200000,
chr21:6125000-6150000~~chr21:43200000-43225000,
chr21:6125000-6150000~~chr21:43300000-43325000,
chr21:6125000-6150000~~chr21:43325000-43350000,
chr21:6125000-6150000~~chr21:43350000-43375000,
chr21:6125000-6150000~~chr21:43400000-43425000,
chr21:6125000-6150000~~chr21:43575000-43600000,
chr21:6125000-6150000~~chr21:43625000-43650000,
chr21:6150000-6175000~~chr21:43350000-43375000,
chr21:6150000-6175000~~chr21:43375000-43400000,