- Basic information
- CohesinDB ID: CDBP00412061
- Locus: chr21-6361668-6364067
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, ENCSR000FAD, GSE72082, ENCSR501LQA, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE105028, GSE73207, GSE131606, ENCSR330ELC, ENCSR000EDW, GSE108869, ENCSR000BUC, GSE115602, ENCSR000EFJ, ENCSR000BTU, GSE25021, ENCSR000DZP, ENCSR000EAC, GSE93080, ENCSR000BKV, GSE76893, GSE101921, ENCSR806UKK, GSE135093, GSE206145-NatGen2015, GSE138105, ENCSR199XBQ, ENCSR703TNG, GSE116344, GSE145327, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR193NSH, ENCSR768DOX, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, ENCSR620NWG, ENCSR767DFK, ENCSR807WAC, ENCSR981FDC, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR000BTQ, GSE55407, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE110061, GSE129526, ENCSR000HPG, ENCSR676MJK, GSE155324, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE50893, ENCSR748MVX, GSE38411
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Cell type: RH4, GM10847, GM2610, SLK, GM19240, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, GM18505, Lymphoblast, TF-1, GM12878, GM2588, SK-N-SH, GM19239, GM19193, THP-1, GM19099, MCF-7, GM12892, HCT-116, Hep-G2, A-549, HUVEC, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 35% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.522
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops