- Basic information
- CohesinDB ID: CDBP00412065
- Locus: chr21-6430046-6430629
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Data sourse: GSE206145-NatGen2015, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:6425000-6450000~~chr21:42525000-42550000,
chr21:6425000-6450000~~chr21:42575000-42600000,
chr21:6425000-6450000~~chr21:42625000-42650000,
chr21:6425000-6450000~~chr21:42725000-42750000,
chr21:6425000-6450000~~chr21:42900000-42925000,
chr21:6425000-6450000~~chr21:43000000-43025000,
chr21:6425000-6450000~~chr21:43025000-43050000,
chr21:6425000-6450000~~chr21:43300000-43325000,
chr21:6425000-6450000~~chr21:43575000-43600000,
chr21:6425000-6450000~~chr21:43625000-43650000,