- Basic information
- CohesinDB ID: CDBP00412069
- Locus: chr21-6435986-6439394
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE116868, GSE105028, GSE131606, GSE108869, GSE25021, GSE115602, ENCSR917QNE, ENCSR000BTU, GSE93080, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, GSE112028, GSE130135, ENCSR703TNG, ENCSR000EEG, ENCSR338DUC, GSE98367, ENCSR000BLS, GSE206145, ENCSR000ECE, GSE62063, ENCSR635OSG, ENCSR000BTQ, ENCSR167MTG, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE126990, GSE50893, GSE126755, ENCSR000ECS, GSE38411
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Cell type: Liver, H9-hESC, RPE, Fibroblast, Ishikawa, HeLa-S3, K-562, BCBL-1, GM18486, DKO, H1-hESC, MB157, GM12878, HeLa-Tet-On, Macrophage, Ramos, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 13% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.733
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:6425000-6450000~~chr21:42525000-42550000,
chr21:6425000-6450000~~chr21:42575000-42600000,
chr21:6425000-6450000~~chr21:42625000-42650000,
chr21:6425000-6450000~~chr21:42725000-42750000,
chr21:6425000-6450000~~chr21:42900000-42925000,
chr21:6425000-6450000~~chr21:43000000-43025000,
chr21:6425000-6450000~~chr21:43025000-43050000,
chr21:6425000-6450000~~chr21:43300000-43325000,
chr21:6425000-6450000~~chr21:43575000-43600000,
chr21:6425000-6450000~~chr21:43625000-43650000,