- Basic information
- CohesinDB ID: CDBP00412081
- Locus: chr21-6465038-6469241
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE126634, GSE116868, ENCSR000BLY, ENCSR404BPV, GSE25021, GSE108869, ENCSR330ELC, GSE115602, ENCSR000EFJ, GSE165895, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE206145-NatGen2015, ENCSR198ZYJ, GSE130135, GSE116344, GSE106870, GSE118494, ENCSR338DUC, ENCSR000BLS, GSE206145, ENCSR981FDC, GSE62063, ENCSR000EHX, ENCSR853VWZ, GSE131956, GSE111913, ENCSR000EDE, ENCSR153HNT, GSE83726, GSE126755, ENCSR000ECS
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Cell type: RH4, CVI-hiPSC, RPE, Fibroblast, HeLa-S3, IMR-90, K-562, HFFc6, H1-hESC, MB157, GBM39, SK-N-SH, RT-112, HAP1, Ramos, MCF-7, HCT-116, HEK293T, Hep-G2, Neurons-H1, A-549, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 12% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.744
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): CBSL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops