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Basic information

CohesinDB ID: CDBP00412109

Locus: chr21-6552572-6555229

Data sourse: ENCSR230ZWH, GSE72082, GSE116868, ENCSR000BLY, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR917QNE, ENCSR000EFJ, GSE165895, GSE93080, ENCSR000DZP, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, GSE116344, ENCSR000EEG, ENCSR000BLS, GSE206145, GSE85526, GSE62063, ENCSR000BMY, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, GSE131956, GSE110061, GSE129526, ENCSR000HPG, GSE111913, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS

Cell type: RH4, GM2610, GM19240, Liver, HuCC-T1, RPE, GM2630, Fibroblast, HEKn, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, HFFc6, SNYDER, MB157, GM12878, GM12891, GM2588, GBM39, SK-N-SH, RT-112, GM19193, Ramos, MCF-7, GM12892, Hela-Kyoto, HCT-116, Hep-G2, A-549

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 19% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.633

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 42% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: .

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412109