Deatailed information for cohesin site CDBP00412112

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  • Basic information
  • CohesinDB ID: CDBP00412112
  • Locus: chr21-6559694-6571927
  • Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE115248, ENCSR247LSH, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
  • Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, TC-71, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, CNCC-WT33iPSC, BGO3, Neutrophil, GM18951
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 82% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.144
  • Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
  • CTCF binding site: CTCF CTCF motif: True
  • Genomic location: TSS,TES,Intergenic
  • 3D genome
  • TAD boundary: non-Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 42% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: ".": 100%, "NotApplicable": 0%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: ZNF391, ZNF621, NME2, PATZ1, SUZ12, ZFHX2, ZBTB7B, HDGF, INSM2, BMI1, ATF3, ZNF444, KLF14, ZSCAN4, MITF, CDC5L, ZNF629, ZNF121, ZNF217, ZIK1, KLF1, E4F1, ZBTB20, ZNF157, DPF2, PAX8, GLI4, RAD51, ZNF410, ZNF512B, ZNF776, ZNF175, GLIS1, ZNF239, MTA2, ZBTB17, ZSCAN21, ZSCAN5A, ZBTB48, SRF, DDX5, NBN, ZNF300, ZBTB21, ZNF2, ARID1B, RFX1, ZNF398, IKZF1, ZNF639, HNRNPL, CREB1, KLF8, ZNF292, HES1, KLF17, HDAC2, SSRP1, GATAD2B, ZNF146, ZSCAN29, ZNF785, SMARCA5, RELB, ZNF76, SALL2, HDAC1, ZNF707, CRY1, ZNF335, ZFP37, ZNF473, TRIM22, ZNF18, NFIB, BACH1, SP2, ZEB1, SCRT2, SMAD1, KLF9, BCL11A, PHF20, ZBTB7A, ATF7, HNRNPLL, BCOR, MLLT1, NFATC3, ZNF394, KLF13, MEF2B, ZNF207, MTA3, TBL1X, ZNF600, WT1, ZNF662, ZBTB33, TARDBP, ZNF148, ZNF521, ZNF155, HIF1A, SKIL, ZNF311, ZNF143, ZFP69B, SP7, ZNF544, ZNF791, IRF5, PKNOX1, ZNF547, BCL6B, EGR2, BHLHE40, ZBTB40, EGR1, ZBTB26, MYNN, IKZF2, SCRT1, CLOCK, ZSCAN23, ZNF24
  • Target gene symbol (double-evidenced CRMs): .
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops
  • Related gene:
  • Related loop: chr21:6550000-6575000~~chr21:43150000-43175000, chr21:6550000-6575000~~chr21:43175000-43200000, chr21:6550000-6575000~~chr21:43250000-43275000, chr21:6550000-6575000~~chr21:43275000-43300000, chr21:6550000-6575000~~chr21:43300000-43325000, chr21:6550000-6575000~~chr21:43325000-43350000, chr21:6550000-6575000~~chr21:43350000-43375000, chr21:6550000-6575000~~chr21:43600000-43625000, chr21:6550000-6575000~~chr21:43625000-43650000, chr21:6550000-6575000~~chr21:43650000-43675000, chr21:6550000-6575000~~chr21:43725000-43750000,
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