- Basic information
- CohesinDB ID: CDBP00412114
- Locus: chr21-6573214-6574454
-
Data sourse: GSE67783, GSE86191, ENCSR404BPV, ShirahigeLab, GSE85526, ShirahigeLab-NatGen2015, ENCSR153HNT, GSE165895
-
Cell type: RPE, Fibroblast, HCT-116, HEKn, Neurons-H1, K-562, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SMC1,SA1,Rad21,SMC3
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:6550000-6575000~~chr21:43150000-43175000,
chr21:6550000-6575000~~chr21:43175000-43200000,
chr21:6550000-6575000~~chr21:43250000-43275000,
chr21:6550000-6575000~~chr21:43275000-43300000,
chr21:6550000-6575000~~chr21:43300000-43325000,
chr21:6550000-6575000~~chr21:43325000-43350000,
chr21:6550000-6575000~~chr21:43350000-43375000,
chr21:6550000-6575000~~chr21:43600000-43625000,
chr21:6550000-6575000~~chr21:43625000-43650000,
chr21:6550000-6575000~~chr21:43650000-43675000,
chr21:6550000-6575000~~chr21:43725000-43750000,