- Basic information
- CohesinDB ID: CDBP00412167
- Locus: chr21-6927596-6929807
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR000EGW, ENCSR000BLY, GSE25021, GSE131606, ENCSR917QNE, ENCSR000BTU, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE76893, GSE206145-NatGen2015, GSE130135, ENCSR703TNG, GSE116344, ENCSR000BLS, GSE206145, ENCSR000BTQ, GSE131577, ENCSR153HNT, GSE68388, GSE83726, GSE38411
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, HL-60, HEK293T, Hep-G2, RH4, Ishikawa, K-562, SK-N-SH, BCBL-1, Liver, HSPC, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.822
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
45% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops