- Basic information
- CohesinDB ID: CDBP00412221
- Locus: chr21-7324276-7324539
-
Data sourse: GSE50893, GSE73207
-
Cell type: TF-1, GM12878
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC3
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
44% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:7300000-7325000~~chr21:10625000-10650000,
chr21:7300000-7325000~~chr21:10775000-10800000,
chr21:7300000-7325000~~chr21:10800000-10825000,
chr21:7325000-7350000~~chr21:10575000-10600000,
chr21:7325000-7350000~~chr21:10600000-10625000,
chr21:7325000-7350000~~chr21:10625000-10650000,
chr21:7325000-7350000~~chr21:10750000-10775000,
chr21:7325000-7350000~~chr21:10775000-10800000,
chr21:7325000-7350000~~chr21:10800000-10825000,
chr21:7325000-7350000~~chr21:7950000-7975000,
chr21:7325000-7350000~~chr21:9875000-9900000,