- Basic information
- CohesinDB ID: CDBP00412297
- Locus: chr21-7744361-7745852
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Data sourse: GSE104888, ENCSR000BSB, GSE116868, ENCSR404BPV, GSE111537, GSE131606, GSE108869, GSE165895, ENCSR917QNE, GSE67783, ENCSR000BKV, GSE86191, GSE101921, GSE206145-NatGen2015, ENCSR198ZYJ, ENCSR338DUC, GSE206145, GSE38395, GSE110061, GSE111913, ENCSR153HNT, GSE68388, GSE50893, GSE126755, ENCSR000ECS
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Cell type: Liver, HuCC-T1, RPE, GM2630, Fibroblast, HeLa-S3, hLCL, Neutrophil, K-562, GM18486, HFFc6, DKO, SNYDER, MB157, RT-112, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HCAEC, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.756
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
13% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops