Deatailed information for cohesin site CDBP00412307
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00412307
- Locus: chr21-7810813-7811022
- Data sourse: GSE206145, GSE206145-NatGen2015
- Cell type: RPE, Fibroblast
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False
- Compartment: 50% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop: chr21:7800000-7825000~~chr21:33825000-33850000, chr21:7800000-7825000~~chr21:33900000-33925000, chr21:7800000-7825000~~chr21:34350000-34375000, chr21:7800000-7825000~~chr21:34425000-34450000, chr21:7800000-7825000~~chr21:34450000-34475000, chr21:7800000-7825000~~chr21:34500000-34525000, chr21:7800000-7825000~~chr21:34525000-34550000, chr21:7800000-7825000~~chr21:34550000-34575000, chr21:7800000-7825000~~chr21:34575000-34600000, chr21:7800000-7825000~~chr21:34600000-34625000, chr21:7800000-7825000~~chr21:34625000-34650000, chr21:7800000-7825000~~chr21:35925000-35950000, chr21:7800000-7825000~~chr21:36000000-36025000, chr21:7800000-7825000~~chr21:36025000-36050000,
Tools:
- Assay
