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Basic information

CohesinDB ID: CDBP00412321

Locus: chr21-7920265-7920378

Data sourse: GSE132649, GSE206145-NatGen2015

Cell type: T-47D, Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 50% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: LCORL, HNF1A, XBP1, FOXA1, SUZ12, HDGF, BMI1, ZBTB5, PRDM1, ZNF444, ZNF189, TEAD1, BCLAF1, TRIM28, CTCF, TCF12, E4F1, MNT, PRDM4, SOX6, ZNF512B, EHMT2, PLRG1, YBX1, CHD8, POU5F1, CTBP1, DUX4, STAT1, NBN, HIC1, PHB2, ERG, MYC, MCM5, FOXK2, ZNF8, IKZF1, RCOR1, NFRKB, EZH2, HES1, SPI1, HDAC2, GATAD2B, TAF9B, ATM, NCOA2, CIITA, NFXL1, TBX3, MCM2, TRIM22, ZNF384, NFIB, SOX11, ATF2, SP1, ATF7, SRSF9, FOXP1, MLLT1, FOXA2, MTA3, ZNF207, GTF2B, ZBTB33, ZKSCAN1, YY1, RELA, TARDBP, ZNF282, MCM3, HIF1A, ZNF143, ZNF223, NCOA3, IRF5, ZNF687, PKNOX1, T, AR, EGR1, ZNF280D, HSF1, IKZF2, BRD4, CLOCK

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412321