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Basic information

CohesinDB ID: CDBP00412322

Locus: chr21-7922608-7922797

Data sourse: GSE132649, GSE206145-NatGen2015, GSE73207

Cell type: T-47D, Fibroblast, TF-1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SMC3,Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 50% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: YBX1, TRP47, PLRG1, CHD8, FOXA2, LCORL, TOP2A, CTBP1, GTF2B, DUX4, FOXA1, NONO, TBX3, SUZ12, NBN, ARID3A, TRIM22, PHB2, ZKSCAN1, RELA, HDGF, BMI1, MCM5, MYC, ZNF282, MCM3, PRDM1, ARNT, HIF1A, FOXK2, ATF2, ZNF8, IKZF1, NFRKB, VDR, NR3C1, BCLAF1, CREB1, EZH2, LMO2, IRF5, PKNOX1, ESR1, TCF12, SP1, E4F1, HES1, MNT, AR, HDAC2, ZBTB40, PRDM4, GATAD2B, TAF9B, SOX6, ZNF280D, RAD51, ATF7, ATM, BRD4, FOXP1, MLLT1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412322