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Basic information

CohesinDB ID: CDBP00412331

Locus: chr21-7938047-7938613

Data sourse: GSE76815, GSE132649, GSE155828, GSE206145-NatGen2015, GSE135093, ENCSR000ECE, GSE73207, GSE116344, GSE145327, GSE131577

Cell type: H1-hESC, T-47D, Fibroblast, HL-60, RH4, TF-1, Transformed-RPE1, IMR-90, CNCC-WT33iPSC, SK-N-SH, CNCCs-H9ESC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 3% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.867

Subunit: SMC3,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 50% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: YBX1, FOXA2, LCORL, NME2, ZBTB1, XBP1, FOXA1, NONO, TBX3, ZBTB33, NBN, ARID3A, PHB2, TRIM22, ZBTB7B, RELA, HDGF, TARDBP, CDK2, OGG1, BMI1, ZNF282, RFX1, PRDM1, NFIB, ATF2, FOXK2, TAL1, ZNF592, ESRRA, NCOA3, CREB1, EZH2, LMO2, ZNF687, PKNOX1, IRF5, HES1, E4F1, BCL11A, ZBTB40, GATAD2B, SOX6, ATF7, RAD51, ATM, ZNF512B, BRD4, FOXP1, RELB, PLRG1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412331