- Basic information
- CohesinDB ID: CDBP00412332
- Locus: chr21-7940922-7942616
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Data sourse: ENCSR000EHW, GSE206145-NatGen2015, ENCSR000ECE, ENCSR635OSG, GSE116344, GSE145327, GSE126755, ENCSR481YWD, ENCSR000DYE
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Cell type: H1-hESC, Fibroblast, RH4, A-549, CNCC-WT33iPSC, SK-N-SH, Liver, Neutrophil, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SMC3,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
50% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: BRD4, STAT1, RELA, MYC
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:5225000-5250000~~chr21:7925000-7950000,
chr21:7250000-7275000~~chr21:7925000-7950000,
chr21:7925000-7950000~~chr21:10325000-10350000,
chr21:7925000-7950000~~chr21:10425000-10450000,
chr21:7925000-7950000~~chr21:10650000-10675000,
chr21:7925000-7950000~~chr21:10700000-10725000,
chr21:7925000-7950000~~chr21:10800000-10825000,
chr21:7925000-7950000~~chr21:8025000-8050000,
chr21:7925000-7950000~~chr21:8675000-8700000,
chr21:7925000-7950000~~chr21:9225000-9250000,
chr21:7925000-7950000~~chr21:9725000-9750000,