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Basic information

CohesinDB ID: CDBP00412335

Locus: chr21-7947353-7949422

Data sourse: GSE76815, GSE101921, GSE135093, GSE206145-NatGen2015, GSE73207, GSE145327, GSE50893, GSE126755, GSE131577

Cell type: HMEC, Fibroblast, HL-60, TF-1, GM12878, IMR-90, CNCC-WT33iPSC, SK-N-SH, CNCCs-H9ESC, Neutrophil

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.889

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 50% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: YBX1, SMC1A, CHD8, FOXA2, LCORL, MTA3, CRY1, NME2, CTBP1, HNF1A, GTF2B, DUX4, XBP1, STAT1, FOXA1, NONO, TBX3, SUZ12, NBN, MCM2, TRIM22, PHB2, ZKSCAN1, ZBTB33, HNRNPK, ZBTB7B, RELA, HDGF, TARDBP, OGG1, BMI1, MYC, MCM5, ZNF282, ZBTB5, PRDM1, ARNT, NFIB, HIF1A, GRHL3, ZNF444, ATF2, FOXK2, GATA3, STAT3, ZNF8, CBFA2T3, IKZF1, CDK8, RCOR1, NFRKB, NR3C1, ESRRA, NCOA3, BCLAF1, EZH2, MLLT1, IRF5, ESR1, LMO2, PKNOX1, CTCF, TCF12, SP1, E4F1, SPI1, MNT, AR, HDAC2, ZBTB40, GATAD2B, EGLN2, HEXIM1, ATF7, SOX6, RAD51, IKZF2, BRD4, ATM, SRSF9, FOXP1, ZNF512B, PLRG1, EED

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412335