- Basic information
- CohesinDB ID: CDBP00412336
- Locus: chr21-7949872-7950869
-
Data sourse: GSE206145-NatGen2015, GSE135093, GSE145327
-
Cell type: CNCCs-H9ESC, Fibroblast, IMR-90, CNCC-WT33iPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
50% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: YBX1, PLRG1, ZNF207, LCORL, MTA3, FOXA2, CTBP1, STAT1, FOXA1, NONO, ZBTB33, SUZ12, NBN, MCM2, PHB2, TRIM22, HNRNPK, ZBTB7B, RELA, HDGF, CREBBP, NEUROD1, BMI1, MCM5, EHMT2, RFX1, ZBTB5, ZNF282, PRDM1, NFIB, ZNF444, ATF2, FOXK2, SMARCE1, ZNF8, STAT3, IKZF1, NFRKB, ZNF592, ESRRA, NCOA3, BCLAF1, CREB1, ZNF687, PKNOX1, IRF5, CTCF, TCF12, HES1, E4F1, MNT, AR, DPF2, ZBTB40, HDAC2, GATAD2B, ATF7, SOX6, TAF9B, RAD51, ZNF280D, BRD4, ZNF512B, ATM, FOXP1, MLLT1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:5200000-5225000~~chr21:7950000-7975000,
chr21:5225000-5250000~~chr21:7925000-7950000,
chr21:5225000-5250000~~chr21:7950000-7975000,
chr21:5300000-5325000~~chr21:7950000-7975000,
chr21:5350000-5375000~~chr21:7950000-7975000,
chr21:7250000-7275000~~chr21:7925000-7950000,
chr21:7250000-7275000~~chr21:7950000-7975000,
chr21:7325000-7350000~~chr21:7950000-7975000,
chr21:7925000-7950000~~chr21:10325000-10350000,
chr21:7925000-7950000~~chr21:10425000-10450000,
chr21:7925000-7950000~~chr21:10650000-10675000,
chr21:7925000-7950000~~chr21:10700000-10725000,
chr21:7925000-7950000~~chr21:10800000-10825000,
chr21:7925000-7950000~~chr21:8025000-8050000,
chr21:7925000-7950000~~chr21:8675000-8700000,
chr21:7925000-7950000~~chr21:9225000-9250000,
chr21:7925000-7950000~~chr21:9725000-9750000,
chr21:7950000-7975000~~chr21:10000000-10025000,
chr21:7950000-7975000~~chr21:10325000-10350000,
chr21:7950000-7975000~~chr21:10350000-10375000,
chr21:7950000-7975000~~chr21:10400000-10425000,
chr21:7950000-7975000~~chr21:10425000-10450000,
chr21:7950000-7975000~~chr21:10450000-10475000,
chr21:7950000-7975000~~chr21:10550000-10575000,
chr21:7950000-7975000~~chr21:10750000-10775000,
chr21:7950000-7975000~~chr21:10775000-10800000,
chr21:7950000-7975000~~chr21:10800000-10825000,
chr21:7950000-7975000~~chr21:8525000-8550000,
chr21:7950000-7975000~~chr21:8675000-8700000,
chr21:7950000-7975000~~chr21:8750000-8775000,
chr21:7950000-7975000~~chr21:8850000-8875000,
chr21:7950000-7975000~~chr21:8975000-9000000,
chr21:7950000-7975000~~chr21:9000000-9025000,
chr21:7950000-7975000~~chr21:9225000-9250000,
chr21:7950000-7975000~~chr21:9525000-9550000,
chr21:7950000-7975000~~chr21:9575000-9600000,
chr21:7950000-7975000~~chr21:9625000-9650000,
chr21:7950000-7975000~~chr21:9650000-9675000,
chr21:7950000-7975000~~chr21:9725000-9750000,
chr21:7950000-7975000~~chr21:9750000-9775000,
chr21:7950000-7975000~~chr21:9775000-9800000,
chr21:7950000-7975000~~chr21:9800000-9825000,
chr21:7950000-7975000~~chr21:9850000-9875000,
chr21:7950000-7975000~~chr21:9875000-9900000,
chr21:7950000-7975000~~chr21:9925000-9950000,
chr21:7950000-7975000~~chr21:9975000-10000000,