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Basic information

CohesinDB ID: CDBP00412337

Locus: chr21-7951163-7951531

Data sourse: GSE76815, GSE80989, GSE206145-NatGen2015, GSE135093, GSE145327, GSE126755, GSE73207

Cell type: Fibroblast, TF-1, VU1199-F, IMR-90, CNCC-WT33iPSC, SK-N-SH, CNCCs-H9ESC, Neutrophil

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.911

Subunit: SA1,Rad21,SA2,ESCO2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 50% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, LCORL, XBP1, HNF1A, FOXA1, SUZ12, ZBTB7B, HDGF, TSC22D4, BMI1, ZBTB5, PRDM1, ZNF444, MITF, RLF, MAF, TEAD1, BCLAF1, TRIM28, ESR1, OCA2, CTCF, TCF12, EP300, E4F1, MNT, DPF2, IRF4, SOX6, RAD51, ZNF512B, TEAD4, PLRG1, EED, YBX1, CHD8, POU5F1, TOP2A, CTBP1, ZBTB1, DUX4, NONO, NBN, HIC1, PHB2, ERG, OGG1, MCM5, MYC, EZH1, RFX1, PHF21A, GRHL3, FOXK2, GABPA, ZNF8, STAT3, IKZF1, RCOR1, TERF2, NFRKB, VDR, NR3C1, ESRRA, CEBPB, CREB1, CCAR2, EZH2, GRHL2, EBF3, HES1, SPI1, IRF1, HDAC2, GATA2, GATAD2B, TAF9B, ATM, RUNX1, CIITA, SMC1A, CBX1, ZFX, POU4F2, PCBP2, CBX8, TBX3, MCM2, TRIM22, ZNF384, ARNT, NFIB, ATF2, CDK8, TERF1, SP1, NIPBL, ATF7, FOXP1, STAG1, MLLT1, PPARG, ZNF207, FOXA2, MTA3, BRF2, GTF2B, ZNF662, ZBTB33, CDK9, ZKSCAN1, KDM1A, YY1, RELA, TARDBP, NEUROD1, ZNF282, MCM3, HIF1A, ZNF311, TAL1, NRIP1, ZNF143, TLE3, KLF4, NCOA3, IRF5, PKNOX1, ZNF687, AR, ZBTB40, ZNF280D, HSF1, IKZF2, BRD4, AHR

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412337