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Basic information

CohesinDB ID: CDBP00412339

Locus: chr21-7955437-7958202

Data sourse: GSE67783, GSE25021, GSE101921, GSE206145-NatGen2015, ENCSR635OSG, GSE145327, GSE73207

Cell type: MCF-7, HMEC, Fibroblast, TF-1, CNCC-WT33iPSC, Liver, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.922

Subunit: SA1,Rad21,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 50% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: ".": 100%, "NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, TERF1, GATAD2B, RFX1, NFIB, RAD51, ZNF444, FOXK2, ZBTB33, SUZ12, TCF12, E4F1, MNT

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412339