- Basic information
- CohesinDB ID: CDBP00412343
- Locus: chr21-7963962-7964294
-
Data sourse: GSE145327, GSE50893
-
Cell type: GM12878, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
50% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
".": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:5200000-5225000~~chr21:7950000-7975000,
chr21:5225000-5250000~~chr21:7950000-7975000,
chr21:5300000-5325000~~chr21:7950000-7975000,
chr21:5350000-5375000~~chr21:7950000-7975000,
chr21:7250000-7275000~~chr21:7950000-7975000,
chr21:7325000-7350000~~chr21:7950000-7975000,
chr21:7950000-7975000~~chr21:10000000-10025000,
chr21:7950000-7975000~~chr21:10325000-10350000,
chr21:7950000-7975000~~chr21:10350000-10375000,
chr21:7950000-7975000~~chr21:10400000-10425000,
chr21:7950000-7975000~~chr21:10425000-10450000,
chr21:7950000-7975000~~chr21:10450000-10475000,
chr21:7950000-7975000~~chr21:10550000-10575000,
chr21:7950000-7975000~~chr21:10750000-10775000,
chr21:7950000-7975000~~chr21:10775000-10800000,
chr21:7950000-7975000~~chr21:10800000-10825000,
chr21:7950000-7975000~~chr21:8525000-8550000,
chr21:7950000-7975000~~chr21:8675000-8700000,
chr21:7950000-7975000~~chr21:8750000-8775000,
chr21:7950000-7975000~~chr21:8850000-8875000,
chr21:7950000-7975000~~chr21:8975000-9000000,
chr21:7950000-7975000~~chr21:9000000-9025000,
chr21:7950000-7975000~~chr21:9225000-9250000,
chr21:7950000-7975000~~chr21:9525000-9550000,
chr21:7950000-7975000~~chr21:9575000-9600000,
chr21:7950000-7975000~~chr21:9625000-9650000,
chr21:7950000-7975000~~chr21:9650000-9675000,
chr21:7950000-7975000~~chr21:9725000-9750000,
chr21:7950000-7975000~~chr21:9750000-9775000,
chr21:7950000-7975000~~chr21:9775000-9800000,
chr21:7950000-7975000~~chr21:9800000-9825000,
chr21:7950000-7975000~~chr21:9850000-9875000,
chr21:7950000-7975000~~chr21:9875000-9900000,
chr21:7950000-7975000~~chr21:9925000-9950000,
chr21:7950000-7975000~~chr21:9975000-10000000,