- Basic information
- CohesinDB ID: CDBP00412412
- Locus: chr21-8757300-8758078
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Data sourse: GSE67783, GSE86191, GSE206145-NatGen2015, GSE83726, GSE50893
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Cell type: Fibroblast, RH4, HCT-116, HSPC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"9_Het": 69%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 48
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:5225000-5250000~~chr21:8750000-8775000,
chr21:7250000-7275000~~chr21:8750000-8775000,
chr21:7950000-7975000~~chr21:8750000-8775000,
chr21:8750000-8775000~~chr21:10250000-10275000,
chr21:8750000-8775000~~chr21:10325000-10350000,
chr21:8750000-8775000~~chr21:10350000-10375000,
chr21:8750000-8775000~~chr21:10425000-10450000,
chr21:8750000-8775000~~chr21:10575000-10600000,
chr21:8750000-8775000~~chr21:10600000-10625000,
chr21:8750000-8775000~~chr21:10625000-10650000,
chr21:8750000-8775000~~chr21:10750000-10775000,
chr21:8750000-8775000~~chr21:40000000-40025000,
chr21:8750000-8775000~~chr21:40025000-40050000,
chr21:8750000-8775000~~chr21:8850000-8875000,