Browse_each

Basic information

CohesinDB ID: CDBP00412413

Locus: chr21-8758420-8759556

Data sourse: GSE118494, GSE143937, GSE206145-GSE177045, GSE67783, ENCSR000BKV, GSE86191, GSE116868, ENCSR000EGW, ENCSR000BLY, ENCSR879KXD, ENCSR000EHW, GSE206145-NatGen2015, GSE206145, ENCSR000EHX, ENCSR153HNT

Cell type: MCF-7, RPE, Fibroblast, HCT-116, MB157, IMR-90, SK-N-SH, K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.900

Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "9_Het": 71%, "8_ZNF/Rpts": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, BRD3, MYCN, RBBP5, ZFX, ZBTB48, RBFOX2, CDK9, ERG, YY1, RELA, PRPF4, TARDBP, MYC, NRF1, HIF1A, GABPA, STAT3, MAX, ZNF143, CSNK2A1, ELF1, ETV1, KDM5B, SMAD5, PHF8, AR, TRIM24, HEXIM1, BRD4, E2F1, GTF2F1

Target gene symbol (double-evidenced CRMs): TPTE

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 53

Related genes and loops

Related gene: ENSG00000274391,

eachgene

Deatailed information for cohesin site CDBP00412413