- Basic information
- CohesinDB ID: CDBP00412423
- Locus: chr21-8784821-8785458
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Data sourse: GSE116344, GSE132649, GSE126755, GSE67783
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Cell type: T-47D, RH4, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 63%,
"9_Het": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE,TEKT4P2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 45
- Related genes and loops
- Related gene:
ENSG00000274391,
ENSG00000188681,
- Related loop:
chr21:5225000-5250000~~chr21:8775000-8800000,
chr21:8775000-8800000~~chr21:10325000-10350000,
chr21:8775000-8800000~~chr21:10425000-10450000,
chr21:8775000-8800000~~chr21:10575000-10600000,
chr21:8775000-8800000~~chr21:9000000-9025000,
chr21:8775000-8800000~~chr21:9100000-9125000,
chr21:8775000-8800000~~chr21:9350000-9375000,
chr21:8775000-8800000~~chr21:9750000-9775000,