- Basic information
- CohesinDB ID: CDBP00412431
- Locus: chr21-8798266-8799646
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Data sourse: GSE67783, GSE86191, ENCSR404BPV, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE112028
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Cell type: RPE, Fibroblast, HCT-116, Neurons-H1, K-562, HeLa-Tet-On, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"9_Het": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TPTE,TEKT4P2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 42
- Related genes and loops
- Related gene:
ENSG00000274391,
ENSG00000188681,
- Related loop:
chr21:5225000-5250000~~chr21:8775000-8800000,
chr21:8775000-8800000~~chr21:10325000-10350000,
chr21:8775000-8800000~~chr21:10425000-10450000,
chr21:8775000-8800000~~chr21:10575000-10600000,
chr21:8775000-8800000~~chr21:9000000-9025000,
chr21:8775000-8800000~~chr21:9100000-9125000,
chr21:8775000-8800000~~chr21:9350000-9375000,
chr21:8775000-8800000~~chr21:9750000-9775000,