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Basic information

CohesinDB ID: CDBP00412477

Locus: chr21-8997319-8997601

Data sourse: ENCSR335RKQ, ENCSR767DFK

Cell type: A-549

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SMC3

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: False

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "9_Het": 48%, "14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: SOX13, SIN3A, FOXA1, ZBTB33, BCL3, GR, SKIL, PROX1, NKX2-1, GATA3, PBX3, MAX, GATA1, CEBPB, ELF1, ZBTB11, BRD2, TCF12, USF1, EP300, SP1, CTCF, REST, ZBTB7A, SSRP1, JUND, TEAD4, GATAD2A, PTBP1, FOSL2

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412477