- Basic information
- CohesinDB ID: CDBP00412482
- Locus: chr21-9007541-9008147
-
Data sourse: GSE116344, GSE67783
-
Cell type: RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"9_Het": 53%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ESR1
- Target gene symbol (double-evidenced CRMs): TPTE
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000274391,
- Related loop:
chr21:5200000-5225000~~chr21:9000000-9025000,
chr21:5225000-5250000~~chr21:9000000-9025000,
chr21:7250000-7275000~~chr21:9000000-9025000,
chr21:7950000-7975000~~chr21:9000000-9025000,
chr21:8775000-8800000~~chr21:9000000-9025000,
chr21:9000000-9025000~~chr21:10125000-10150000,
chr21:9000000-9025000~~chr21:10150000-10175000,
chr21:9000000-9025000~~chr21:10250000-10275000,
chr21:9000000-9025000~~chr21:10400000-10425000,
chr21:9000000-9025000~~chr21:10425000-10450000,
chr21:9000000-9025000~~chr21:10450000-10475000,
chr21:9000000-9025000~~chr21:10575000-10600000,
chr21:9000000-9025000~~chr21:10775000-10800000,
chr21:9000000-9025000~~chr21:9150000-9175000,
chr21:9000000-9025000~~chr21:9175000-9200000,
chr21:9000000-9025000~~chr21:9775000-9800000,