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Basic information

CohesinDB ID: CDBP00412488

Locus: chr21-9023820-9024732

Data sourse: GSE104888, GSE110061, GSE25021, GSE121355, GSE116344, GSE145327

Cell type: MCF-7, RH4, HCT-116, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: NIPBL,SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 41%, "15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: .

Target gene symbol (double-evidenced CRMs): TPTE

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 38

Related genes and loops

Related gene: ENSG00000274391,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00412488

CDBP00412488 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00412488

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