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Basic information

CohesinDB ID: CDBP00412489

Locus: chr21-9026682-9044396

Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, GSE116868, ENCSR000BLY, GSE105028, GSE111537, GSE131606, GSE25021, GSE115602, GSE165895, ENCSR000BTU, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE101921, GSE206145-NatGen2015, GSE112028, GSE116344, GSE145327, GSE94872, GSE118494, ENCSR338DUC, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000ECE, ENCSR000EHX, GSE55407, ENCSR167MTG, GSE110061, GSE129526, GSE111913, ENCSR054FKH, ENCSR153HNT, GSE83726, GSE50893, GSE38411

Cell type: RH4, H9-hESC, RPE, Fibroblast, Ishikawa, IMR-90, K-562, BCBL-1, HFFc6, DKO, GM18526, H1-hESC, MB157, SK-N-SH, RT-112, HeLa-Tet-On, THP-1, MCF-7, HCT-116, Hep-G2, HUVEC, HCAEC, OCI-AML-3, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 15% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.733

Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES,Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 47% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "9_Het": 36%, "15_Quies": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: WT1, ESR1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 646

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00412489