- Basic information
- CohesinDB ID: CDBP00412500
- Locus: chr21-9090697-9093445
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Data sourse: ENCSR167MTG, ENCSR338DUC, GSE118494, GSE67783, GSE72082, GSE86191, GSE116868, GSE111913, GSE206145-NatGen2015, ENCSR054FKH, ENCSR153HNT, GSE83726, GSE116344, GSE145327, GSE50893
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Cell type: Fibroblast, HCT-116, RH4, Hep-G2, MB157, GM12878, RT-112, IMR-90, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"9_Het": 31%,
"15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TEKT4P2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 62
- Related genes and loops