- Basic information
- CohesinDB ID: CDBP00412521
- Locus: chr21-9128859-9130355
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Data sourse: GSE206145-GSE177045, GSE104888, GSE72082, GSE116868, ENCSR000EGW, ENCSR000BLY, GSE111537, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR917QNE, GSE115602, ENCSR000BTU, GSE165895, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE76893, GSE152721, GSE206145-NatGen2015, GSE120943, GSE112028, GSE116344, GSE145327, GSE118494, ENCSR338DUC, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000EHX, ENCSR635OSG, ENCSR167MTG, GSE110061, GSE111913, ENCSR054FKH, ENCSR153HNT, GSE68388, GSE50893, GSE126755, GSE38411
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Cell type: RH4, GM2610, GM19240, OCI-AML-3, HSPC, Liver, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, Ishikawa, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, HFFc6, DKO, GM18951, Monocytes, MB157, GM12891, GM2588, SK-N-SH, RT-112, HeLa-Tet-On, MCF-7, GM12892, HCT-116, Hep-G2, Neutrophil, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 21% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.622
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 35%,
"1_TssA": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TEKT4P2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops