- Basic information
- CohesinDB ID: CDBP00412557
- Locus: chr21-9191362-9192509
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000BLY, GSE103477, GSE111537, GSE131606, GSE25021, ENCSR000BUC, ENCSR000BTU, GSE143937, ENCSR000BKV, GSE138405, GSE76893, GSE138105, GSE112028, GSE116344, GSE145327, ENCSR000EEG, ENCSR000BLS, ENCSR000EHX, ENCSR000BTQ, GSE105004, ENCSR167MTG, GSE129526
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, HCT-116, RH4, Hep-G2, SLK, Ishikawa, A-549, DKO, HeLa, SK-N-SH, K-562, HeLa-Tet-On, OCI-AML-3, THP-1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.811
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 56%,
"15_Quies": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 24
- Related genes and loops