- Basic information
- CohesinDB ID: CDBP00412560
- Locus: chr21-9255835-9261261
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Data sourse: GSE67783, ENCSR000BKV, GSE115250, GSE86191, GSE111913, GSE101921, GSE135093, GSE62063, GSE206145-NatGen2015, ENCSR153HNT, GSE116344, GSE145327, GSE50893
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Cell type: HMEC, Fibroblast, HCT-116, RH4, GM12878, Ramos, RT-112, IMR-90, CNCC-WT33iPSC, TC-71, K-562, CNCCs-H9ESC, TC-32, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
45% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 61
- Related genes and loops