- Basic information
- CohesinDB ID: CDBP00412571
- Locus: chr21-9289596-9295071
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, ENCSR000FAD, GSE72082, ENCSR501LQA, ENCSR760NPX, ENCSR000EGW, ENCSR000BLY, GSE25021, ENCSR150EFU, GSE103477, GSE111537, GSE131606, ENCSR330ELC, ENCSR000EDW, GSE108869, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE115602, ENCSR000EAC, GSE139435, GSE143937, ENCSR000BKV, GSE122299, GSE138405, GSE67783, GSE93080, GSE76893, GSE101921, GSE152721, GSE51234, GSE206145-NatGen2015, GSE112028, GSE130135, ENCSR199XBQ, ENCSR703TNG, GSE116344, GSE138105, GSE145327, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR193NSH, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, ENCSR620NWG, ENCSR748MVX, ENCSR767DFK, ENCSR807WAC, ENCSR495WGO, ENCSR981FDC, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, GSE62063, ENCSR944ZCT, GSE110061, GSE129526, ENCSR676MJK, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, SLK, HSPC, Liver, GP5d, HuCC-T1, H9-hESC, HMEC, Fibroblast, Ishikawa, HeLa-S3, IMR-90, K-562, DKO, H1-hESC, Leukemia-SEM, GM12878, GM12891, GM2588, SK-N-SH, HeLa-Tet-On, THP-1, HUES64, MCF-7, Ramos, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, A-549, HeLa, CNCC-WT33iPSC, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 42% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.578
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
45% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 79
- Related genes and loops