- Basic information
- CohesinDB ID: CDBP00412586
- Locus: chr21-9322143-9334776
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, ENCSR000FAD, GSE72082, ENCSR501LQA, GSE126634, GSE116868, ENCSR760NPX, ENCSR000EGW, ENCSR000BLY, GSE132649, GSE73207, GSE62063, GSE131606, ENCSR330ELC, GSE108869, GSE25021, ENCSR917QNE, GSE115602, ENCSR000BTU, GSE165895, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE76893, GSE152721, ENCSR806UKK, GSE206145-NatGen2015, GSE112028, GSE130135, ENCSR199XBQ, ENCSR703TNG, GSE116344, GSE145327, ENCSR895JMI, GSE118494, ENCSR338DUC, GSE76815, GSE115248, ENCSR193NSH, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR981FDC, ENCSR247LSH, ENCSR807WAC, ENCSR000EHX, ENCSR620NWG, ENCSR635OSG, ENCSR748MVX, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE110061, GSE111913, ENCSR335RKQ, ENCSR054FKH, ENCSR153HNT, GSE126990, GSE50893, ENCSR000ECS, GSE38411
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Cell type: RH4, GM2610, GM19240, HSPC, Liver, H9-hESC, RPE, GM2630, Fibroblast, Ishikawa, Kelly, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, SNYDER, GM18505, MB157, TF-1, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, RT-112, Ramos, MCF-7, GM12892, T-47D, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, GM19238, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 31% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.544
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
45% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 63%,
"9_Het": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM24, YY1
- Target gene symbol (double-evidenced CRMs): TEKT4P2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 132
- Related genes and loops